# Set here the desired C compiler and its optimization options
CC   = gcc
COPT = -O -Wall  

# To create Matlab gateway routines
# Note: use $(CC) as the mex C compiler
MEX  = mex

HEADERS = caca_Global.h  caca_Parameters.h  caca_Sparse.h

SPSRC = caca_JacobianSP.c \
	caca_HessianSP.c  \
	caca_StoichiomSP.c

SPOBJ = caca_JacobianSP.o \
	caca_HessianSP.o  \
	caca_StoichiomSP.o


SRC =   caca_Main.c      caca_Integrator.c   \
	caca_Function.c  caca_Initialize.c   \
	caca_Jacobian.c  caca_LinearAlgebra.c\
	caca_Rates.c     caca_Hessian.c      \
	caca_Stoichiom.c caca_Util.c         \
	caca_Monitor.c

OBJ =   caca_Main.o      caca_Integrator.o   \
	caca_Function.o  caca_Initialize.o   \
	caca_Jacobian.o  caca_LinearAlgebra.o\
	caca_Rates.o     caca_Hessian.o      \
	caca_Stoichiom.o caca_Util.o         \
	caca_Monitor.o

STOCHSRC = caca_Stochastic.c 
STOCHOBJ = caca_Stochastic.o 

all:    exe

exe:	$(HEADERS) $(SPOBJ) $(OBJ)
	$(CC) $(COPT) $(SPOBJ) $(OBJ) -lm -o caca.exe	

stochastic:$(HEADERS) $(SPOBJ) $(OBJ) $(STOCHOBJ)
	$(CC) $(COPT) $(SPOBJ) $(OBJ) $(STOCHOBJ) -lm \
	-o caca_stochastic.exe	

mex:    $(HEADERS) $(SPOBJ) $(OBJ)
	$(MEX) CC#$(CC) -O caca_mex_Fun.c     -lm $(SPOBJ) $(OBJ)
	$(MEX) CC#$(CC) -O caca_mex_Jac_SP.c  -lm $(SPOBJ) $(OBJ)
	$(MEX) CC#$(CC) -O caca_mex_Hessian.c -lm $(SPOBJ) $(OBJ)


clean:
	rm -f $(SPOBJ) $(OBJ) caca.exe caca_*.mexglx caca*.dat

distclean:
	rm -f $(SPOBJ) $(OBJ) caca.exe caca*.dat \
	caca_*.c caca_*.h caca_*.map caca_*.mexglx

caca_Monitor.o: caca_Monitor.c $(HEADERS)
	$(CC) $(COPT) -c $<

caca_JacobianSP.o: caca_JacobianSP.c $(HEADERS)
	$(CC) $(COPT) -c $<

caca_HessianSP.o: caca_HessianSP.c  $(HEADERS)
	$(CC) $(COPT) -c $<

caca_StoichiomSP.o: caca_StoichiomSP.c $(HEADERS)
	$(CC) $(COPT) -c $<

caca_Main.o: caca_Main.c caca_Initialize.o $(HEADERS) $(SPOBJ)
	$(CC) $(COPT) -c $<

caca_Integrator.o: caca_Integrator.c  $(HEADERS) $(SPOBJ)
	$(CC) $(COPT) -c $<

caca_Initialize.o: caca_Initialize.c  $(HEADERS) $(SPOBJ)
	$(CC) $(COPT) -c $<

caca_Function.o: caca_Function.c  $(HEADERS) $(SPOBJ)
	$(CC) $(COPT) -c $<

caca_Stochastic.o: caca_Stochastic.c  $(HEADERS) $(SPOBJ)
	$(CC) $(COPT) -c $<

caca_Jacobian.o: caca_Jacobian.c  $(HEADERS) $(SPOBJ)
	$(CC) $(COPT) -c $<

caca_LinearAlgebra.o: caca_LinearAlgebra.c  $(HEADERS) $(SPOBJ)
	$(CC) $(COPT) -c $<

caca_Rates.o: caca_Rates.c  $(HEADERS) $(SPOBJ)
	$(CC) $(COPT) -c $<

caca_Hessian.o:  caca_Hessian.c $(HEADERS) $(SPOBJ)
	$(CC) $(COPT) -c $<

caca_Stoichiom.o: caca_Stoichiom.c  $(HEADERS) $(SPOBJ)
	$(CC) $(COPT) -c $<

caca_Util.o: caca_Util.c  $(HEADERS) $(SPOBJ)
	$(CC) $(COPT) -c $<