#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# User: Set here the F90 compiler and options
#       Pedefined compilers: INTEL, PGF, HPUX, LAHEY
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

COMPILER = GNU
#COMPILER = LAHEY
#COMPILER = INTEL
#COMPILER = PGF
#COMPILER = HPUX

FC_GNU     = g95
FOPT_GNU   = -cpp -O -pg -fbounds-check 
FC_LAHEY   = lf95
FOPT_LAHEY = -Cpp --pca
#FOPT_LAHEY = -Cpp --chk a,e,s,u --pca --ap -O0 -g --trap
FC_INTEL   = ifort 
FOPT_INTEL = -cpp -O -mp -pc80 -prec_div -tpp7 -implicitnone
FC_PGF     = pgf90
FOPT_PGF   = -Mpreprocess -O -fast -pc 80 -Kieee
FC_HPUX    = f90
FOPT_HPUX  = -O -u +Oall +check=on

# define FULL_ALGEBRA for non-sparse integration
FC   = $(FC_$(COMPILER))
FOPT = $(FOPT_$(COMPILER)) # -DFULL_ALGEBRA

LIBS =
#LIBS = -llapack -lblas

# Command to create Matlab mex gateway routines 
# Note: use $(FC) as the mex Fortran compiler
MEX  = mex

GENSRC = pan_Precision.f90  \
	 pan_Parameters.f90     \
	 pan_Global.f90  

GENOBJ = pan_Precision.o    \
	 pan_Parameters.o       \
	 pan_Global.o     

FUNSRC = pan_Function.f90 
FUNOBJ = pan_Function.o 

JACSRC = pan_JacobianSP.f90  pan_Jacobian.f90
JACOBJ = pan_JacobianSP.o    pan_Jacobian.o

HESSRC = pan_HessianSP.f90   pan_Hessian.f90
HESOBJ = pan_HessianSP.o     pan_Hessian.o

STMSRC = pan_StoichiomSP.f90 pan_Stoichiom.f90 
STMOBJ = pan_StoichiomSP.o   pan_Stoichiom.o

UTLSRC = pan_Rates.f90 pan_Util.f90 pan_Monitor.f90
UTLOBJ = pan_Rates.o   pan_Util.o   pan_Monitor.o

LASRC  = pan_LinearAlgebra.f90 
LAOBJ  = pan_LinearAlgebra.o   

STOCHSRC = pan_Stochastic.f90 
STOCHOBJ = pan_Stochastic.o 

MAINSRC = pan_Main.f90   pan_Initialize.f90   pan_Integrator.f90 pan_Model.f90
MAINOBJ = pan_Main.o     pan_Initialize.o     pan_Integrator.o   pan_Model.o 

#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# User: modify the line below to include only the
#       objects needed by your application
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ALLOBJ = $(GENOBJ) $(FUNOBJ) $(JACOBJ) $(HESOBJ) $(STMOBJ) \
	 $(UTLOBJ) $(LAOBJ)

#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# User: modify the line below to include only the
#       executables needed by your application
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
all:    exe

exe:	$(ALLOBJ) $(MAINOBJ) 
	$(FC) $(FOPT) $(ALLOBJ) $(MAINOBJ) $(LIBS) -o pan.exe

stochastic:$(ALLOBJ) $(STOCHOBJ) $(MAINOBJ)
	$(FC) $(FOPT) $(ALLOBJ) $(STOCHOBJ) $(MAINOBJ) $(LIBS) \
	-o pan_stochastic.exe

mex:    $(ALLOBJ)
	$(MEX) FC#$(FC) -fortran -O pan_mex_Fun.f90     $(ALLOBJ)
	$(MEX) FC#$(FC) -fortran -O pan_mex_Jac_SP.f90  $(ALLOBJ)
	$(MEX) FC#$(FC) -fortran -O pan_mex_Hessian.f90 $(ALLOBJ)

clean:
	rm -f pan*.o pan*.mod \
	pan*.dat pan.exe pan*.mexglx \
	pan.map

distclean:
	rm -f pan*.o pan*.mod \
	pan*.dat pan.exe pan.map \
	pan*.f90 pan_*.mexglx

pan_Precision.o: pan_Precision.f90 
	$(FC) $(FOPT) -c $<

pan_Parameters.o: pan_Parameters.f90 \
	            pan_Precision.o
	$(FC) $(FOPT) -c $<

pan_Monitor.o: pan_Monitor.f90 \
	             pan_Precision.o
	$(FC) $(FOPT) -c $<

pan_Global.o: pan_Global.f90 \
	            pan_Parameters.o pan_Precision.o
	$(FC) $(FOPT) -c $<

pan_Initialize.o: pan_Initialize.f90  $(GENOBJ) 
	$(FC) $(FOPT) -c $<

pan_Function.o: pan_Function.f90  $(GENOBJ) 
	$(FC) $(FOPT) -c $<

pan_Stochastic.o: pan_Stochastic.f90  $(GENOBJ) 
	$(FC) $(FOPT) -c $<

pan_JacobianSP.o: pan_JacobianSP.f90 $(GENOBJ)
	$(FC) $(FOPT) -c $<

pan_Jacobian.o: pan_Jacobian.f90  $(GENOBJ) pan_JacobianSP.o
	$(FC) $(FOPT) -c $<

pan_LinearAlgebra.o: pan_LinearAlgebra.f90 $(GENOBJ) pan_JacobianSP.o
	$(FC) $(FOPT) -c $<

pan_Rates.o: pan_Rates.f90  $(GENOBJ) 
	$(FC) $(FOPT) -c $<

pan_HessianSP.o: pan_HessianSP.f90  $(GENOBJ)
	$(FC) $(FOPT) -c $<

pan_Hessian.o:  pan_Hessian.f90 $(GENOBJ) pan_HessianSP.o
	$(FC) $(FOPT) -c $<

pan_StoichiomSP.o: pan_StoichiomSP.f90 $(GENOBJ)
	$(FC) $(FOPT) -c $<

pan_Stoichiom.o: pan_Stoichiom.f90  $(GENOBJ) pan_StoichiomSP.o
	$(FC) $(FOPT) -c $<

pan_Util.o: pan_Util.f90  $(GENOBJ) pan_Monitor.o
	$(FC) $(FOPT) -c $<

pan_Main.o: pan_Main.f90  $(ALLOBJ) pan_Initialize.o pan_Model.o pan_Integrator.o
	$(FC) $(FOPT) -c $<

pan_Model.o: pan_Model.f90  $(ALLOBJ) pan_Integrator.o
	$(FC) $(FOPT) -c $<

pan_Integrator.o: pan_Integrator.f90  $(ALLOBJ)
	$(FC) $(FOPT) -c $<